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HvrBase: Home
Welcome to the HvrBase site.
The HvrBase was developed as a tool to facilitate the retrieval and analysis of human and primate mitochondrial DNA (mtDNA).
Introduction
We present here the mtDNA collection originally mentioned in Compilation of human mtDNA control region sequences by Oliva Handt, Sonja Meyer and Arndt von Haeseler (Nucleic Acids Research, 1998, Vol. 26, No. 1, 126-129, click on link to download PDF file of article). See also the update HvrBase: Compilation of mtDNA control region sequences from primates (submitted to Nucleic Acids Research, click on link to download PDF file of article).
HvrBase is a compilation of human and ape mtDNA control region sequences. Sequences and related informations on individuals, such as from where the sequences were obtained, is stored in a relational database. The HvrBase is via www available from everywhere in the world.
This is the database HVR-Base (Version 1.0 alpha release). You can search for sequences from great apes, humans and neanderthaler.
Search criteria are continent, original reference, country and motifs. You can choose are variety of output formats.
GREAT APES
HUMANS
NEANDERTHALER
HvrBase Statistic
Our data have been largely compiled from published sequences. Although we have taken great pains to minimize mistakes, there may still sequences in our collection that contain errors or where some annotatian are not corrected. Therefore we are greatful if bugs or obscurities are pointed out us.
We solicit everybody to furnish new sequences via electronic mail together with the relevant information. We would also be grateful to receive already published sequences which are missing in our collection.
Cite us
If you work with the HvrBase und want to cite us in your publication, please cite the paper
Compilation of human mtDNA control region sequences
by Oliva Handt, Sonja Meyer and Arndt von Haeseler
(Nucleic Acids Research, 1998, Vol. 26, No. 1, 126-12)
Faculties
Nationalities
Libraries
Students
HvrBase: Apes
Search for
Continent:
All
Original reference:
All
Species:
All
Geographical origin::
All
Population:
All
HVR I
Startposition
min. 16001 Endposition
max. 16408 Motif
HVR II
Startposition
min. 1 Endposition
max. 408 Motif
Paraphernalia
show only sequences without
? N
in the specified region
Output
Sequences hvrI from position
16001
to position
16408
hvrII from position
1
to position
408
Format phylip
text
Name integers
original name
free style
Reference Sequence No reference
Anderson
ID number
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