Compilation of human mtDNA control region

sequences


.


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HvrBase: Home

Welcome to the HvrBase site.

The HvrBase was developed as a tool to facilitate the retrieval and analysis of human and primate mitochondrial DNA (mtDNA).

Introduction

We present here the mtDNA collection originally mentioned in Compilation of human mtDNA control region sequences by Oliva Handt, Sonja Meyer and Arndt von Haeseler (Nucleic Acids Research, 1998, Vol. 26, No. 1, 126-129, click on link to download PDF file of article). See also the update HvrBase: Compilation of mtDNA control region sequences from primates (submitted to Nucleic Acids Research, click on link to download PDF file of article).

HvrBase is a compilation of human and ape mtDNA control region sequences. Sequences and related informations on individuals, such as from where the sequences were obtained, is stored in a relational database. The HvrBase is via www available from everywhere in the world.


This is the database HVR-Base (Version 1.0 alpha release). You can search for sequences from great apes, humans and neanderthaler.

Search criteria are continent, original reference, country and motifs. You can choose are variety of output formats.


GREAT APES

HUMANS

NEANDERTHALER

HvrBase Statistic

Our data have been largely compiled from published sequences. Although we have taken great pains to minimize mistakes, there may still sequences in our collection that contain errors or where some annotatian are not corrected. Therefore we are greatful if bugs or obscurities are pointed out us.

We solicit everybody to furnish new sequences via electronic mail together with the relevant information. We would also be grateful to receive already published sequences which are missing in our collection.


Cite us

If you work with the HvrBase und want to cite us in your publication, please cite the paper

Compilation of human mtDNA control region sequences

by Oliva Handt, Sonja Meyer and Arndt von Haeseler

(Nucleic Acids Research, 1998, Vol. 26, No. 1, 126-12)


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HvrBase: Apes

Search for

Continent:

All


Original reference:

All


Species:

All


Geographical origin::

All


Population:

All


HVR I

Startposition

min. 16001 Endposition

max. 16408 Motif

HVR II

Startposition

min. 1 Endposition

max. 408 Motif

Paraphernalia

show only sequences without

?  N

in the specified region

Output

Sequences hvrI from position 

16001

to position 

16408


hvrII from position 

1

to position 

408

Format phylip

text

Name integers

original name

free style 

Reference Sequence No reference

Anderson

ID number 



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